ATAC Sequencing
About the Data
Method and Protocol
Information forthcoming
Data Visualization
Information forthcoming
Data Access
Access the data through:
- Level 1: FASTQ (By request with DUA)
- Level 2: BAM (By request with DUA)
- Level 3: H5 and RDS (AWS)
For a description of the files see the table below.
About the Samples
The following are planned to be sequenced:
- 50 breast samples
Instruments
Information forthcoming
About the Data Generators
This data was generated and analyzed by teams in the labs of Joan Brugge and Henry Long.
Data Levels:
| Data Level | Description | File Format | File Size (per patient) | Data Access |
|---|---|---|---|---|
| Raw sequences (Level 1) | Nucleotide sequence and quality scores | FASTQ | By request with DUA | |
| Aligned sequences (Level 2) | Sequencing data aligned to a reference genome | BAM | By request with DUA | |
| Aggregated data (Level 3) | Seurat object with QC, analysis, and exploration of ATAC sequencing data | H5 and RDS | 30 GB | AWS |
| All files | Total per sample | 80 GB |