Xenium in Situ
Xenium in situ is a targeted spatial transcriptomics platform that enables single-cell, spatially resolved RNA profiling directly in intact FFPE tissue sections.
About the Data
Method and Protocol
Learn about the Xenium in situ method by reading:
- forthcoming
Data Visualization
Full-resolution images can be viewed in a web browser using Minerva:
- via the gallery (forthcoming)
- in cBioPortal (forthcoming)
Learn more about the Minerva software at minerva.im.
Data Access
Data will be accessible from the following:
- Levels 1: h5 (TBD)
- Level 4: csv (AWS)
For a description of the files see the table below.
About the Samples
The following have been imaged with Xenium:
- 6 ovarian STIC samples
Instruments
Information forthcoming
About the Data Generators
This data was generated and analyzed by the Laboratory of Systems Pharmacology at Harvard Medical School.
Data Levels:
| Data Type | Description | File Format | Average size (per sample) | Data Location |
|---|---|---|---|---|
| Raw images (Level 1) | Collected using ORION | h5 | TBD | |
| Single-cell spatial feature tables (Level 4) | Summarize the expression of marker intensities and morphological features for each cell | csv | AWS |